About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3030658_3086220_F

Intron Information:

Intron Rank:
126877
Intron Class:
major
Intron Phase:
Intron Coordinates:
3030658 - 3086220
Intron Length:
55563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCG
5'SS Class:
major
3'SS Sequence:
AGTCTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTGCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
64.3
40
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.8
0.58
1
68.6
41.6
Minor 5ss
39.2
-1.2
3
50.4
46
Minor BPS
59.1
0.28
1.9
71.5
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018350
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045867
3030339 - 3161872
131534
ENSAPLT00000033750
3030339 - 3087110
56772
ENSAPLT00000030428
3030339 - 3131307
100969
ENSAPLT00000047852
3030339 - 3176393
146055