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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3084761_3086220_F

Intron Information:

Intron Rank:
126879
Intron Class:
major
Intron Phase:
Intron Coordinates:
3084761 - 3086220
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAGAA
5'SS Class:
major
3'SS Sequence:
AGTCTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTGCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.4
30.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.8
0.58
1
68.6
41.6
Minor 5ss
32.2
-2
3.4
42.7
44.5
Minor BPS
59.1
0.28
1.9
71.5
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018350
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047478
3084591 - 3153879
69289
ENSAPLT00000033029
3084591 - 3161872
77282