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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3242337_3243904_F

Intron Information:

Intron Rank:
142217
Intron Class:
major
Intron Phase:
Intron Coordinates:
3242337 - 3243904
Intron Length:
1568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026586
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031415
3241648 - 3339562
97915
ENSAPLT00000027333
3241648 - 3339562
97915