Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3243960_3335944_F

Intron Information:

Intron Rank:

142218

Intron Class:

major

Intron Phase:

Intron Coordinates:

3243960 - 3335944

Intron Length:

91985

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.9

0.76

0.8

77.4

36.7

Minor 5ss

41.2

-1

2.9

54.6

44.5

Minor BPS

64.7

0.54

1.5

79.8

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027333

3241648 - 3339562

97915