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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_328987_371060_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
328987 - 371060
Intron Length:
42074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
CTCTCCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCCTTTCTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
57
47.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.4
0.57
0.8
69
31.5
Minor 5ss
30.3
-2.3
3.2
35.4
42.3
Minor BPS
60.1
0.4
1.7
75.41
41.9

Associated Gene:

Gene:
HTR4
Ensembl Gene ID:
ENSAPLG00000009505
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019812
328761 - 458932
130172
ENSAPLT00000042945
328761 - 416190
87430
ENSAPLT00000039908
328761 - 457643
128883
ENSAPLT00000021969
328761 - 413462
84702