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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3404827_3405209_R

Intron Information:

Intron Rank:
149709
Intron Class:
major
Intron Phase:
Intron Coordinates:
3404827 - 3405209
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTAATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.8
0.45
1
67.5
38
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
59.3
0.37
1.5
71.81
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028083
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047356
3404377 - 3406825
2449