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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3541226_3615952_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3541226 - 3615952
Intron Length:
74727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
CCTCTTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AAACATTCAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
75.3
0.57
0.9
71.5
33
Minor 5ss
32.3
-2
3.1
37
42.7
Minor BPS
44.6
-0.3
1.7
57.35
38

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027261
3541174 - 4212991
671818