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Intron Name: Anas_platyrhynchos_platyrhynchos_14_3616064_3700421_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3616064 - 3700421

Intron Length:

84358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTAATTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TATCCTTTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

71.9

39.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

81.4

0.71

0.8

73.9

41.2

Minor 5ss

34.2

-1.8

2.9

41.7

Minor BPS

0.96

1.1

86.67

32.6

Associated Gene:

Gene:

TENM2

Ensembl Gene ID:

ENSAPLG00000003760

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033019

3615953 - 4212991

597039

ENSAPLT00000027261

3541174 - 4212991

671818

ENSAPLT00000044052

3550485 - 4212991

662507

ENSAPLT00000023581

3590967 - 4212991

622025

ENSAPLT00000043924

3550485 - 4212991

662507

ENSAPLT00000034465

3615953 - 4212991

597039