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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3700713_3747264_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3700713 - 3747264
Intron Length:
46552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTGTAATT
Flanking Amino Acid:
HRESDEFPRQGTNFTLAELG
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.5
0.57
0.9
66.7
40
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
70.8
0.73
2
91.31
32.6

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027261
3541174 - 4212991
671818
ENSAPLT00000044052
3550485 - 4212991
662507
ENSAPLT00000023581
3590967 - 4212991
622025
ENSAPLT00000043924
3550485 - 4212991
662507
ENSAPLT00000034465
3615953 - 4212991
597039
ENSAPLT00000033019
3615953 - 4212991
597039