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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_371143_393023_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
371143 - 393023
Intron Length:
21881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
MEELDVNVSSSEGFGIAE
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
75.3
0.57
0.9
65.8
41
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
HTR4
Ensembl Gene ID:
ENSAPLG00000009505
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019812
328761 - 458932
130172
ENSAPLT00000009905
371061 - 412746
41686
ENSAPLT00000042945
328761 - 416190
87430
ENSAPLT00000039908
328761 - 457643
128883
ENSAPLT00000021969
328761 - 413462
84702