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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3747541_3919721_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3747541 - 3919721
Intron Length:
172181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGCCTT
5'SS Class:
major
3'SS Sequence:
TTATTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTATTTCATT
Flanking Amino Acid:
DNENKSDEENDFHTHLSEKL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
64
47.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.66
0.9
78.8
34.6
Minor 5ss
42.9
-0.8
3.5
65.4
45.8
Minor BPS
61.3
0.44
1.9
84.41
36.8

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033019
3615953 - 4212991
597039
ENSAPLT00000027261
3541174 - 4212991
671818
ENSAPLT00000044052
3550485 - 4212991
662507
ENSAPLT00000023581
3590967 - 4212991
622025
ENSAPLT00000043924
3550485 - 4212991
662507
ENSAPLT00000034465
3615953 - 4212991
597039