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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3808760_3995630_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3808760 - 3995630
Intron Length:
186871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGATCTTTGATC
Flanking Amino Acid:
GGRALSSIYRCRPIPPTSSS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
82.6
0.73
0.7
75.7
32.8
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
68.6
0.57
1.1
70.79
34.6

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043044
3808693 - 4212991
404299