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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3908441_3919721_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3908441 - 3919721
Intron Length:
11281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTATC
5'SS Class:
major
3'SS Sequence:
TTATTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTATTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
74.3
36
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.66
0.9
78.8
34.6
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
61.3
0.44
1.9
84.41
36.8

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043087
3908343 - 4212991
304649