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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_3919806_3995630_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3919806 - 3995630
Intron Length:
75825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGGTTT
5'SS Class:
major
3'SS Sequence:
TCCTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGATCTTTGATC
Flanking Amino Acid:
QLAEPKNSLIRRPIPPTSSS
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
79.5
36.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
82.6
0.73
0.7
75.7
32.8
Minor 5ss
44
-0.6
3.4
63.7
41.4
Minor BPS
68.6
0.57
1.1
70.79
34.6

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027261
3541174 - 4212991
671818
ENSAPLT00000043087
3908343 - 4212991
304649
ENSAPLT00000023581
3590967 - 4212991
622025
ENSAPLT00000034465
3615953 - 4212991
597039
ENSAPLT00000033019
3615953 - 4212991
597039
ENSAPLT00000044052
3550485 - 4212991
662507
ENSAPLT00000027758
3864620 - 4212991
348372
ENSAPLT00000043924
3550485 - 4212991
662507