Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_394288_408491_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

394288 - 408491

Intron Length:

14204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

GTTCTCTCACTT

Flanking Amino Acid:

ILHLCCISLDRYYAICCQPL

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

70.5

33.4

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

85.9

0.81

0.7

80.7

24.6

Minor 5ss

36.8

-1.5

3.3

48.1

47.6

Minor BPS

49.4

0.03

1.8

70.05

41.1

Associated Gene:

Gene:

HTR4

Ensembl Gene ID:

ENSAPLG00000009505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009905

371061 - 412746

41686

ENSAPLT00000042945

328761 - 416190

87430

ENSAPLT00000039908

328761 - 457643

128883

ENSAPLT00000021969

328761 - 413462

84702

ENSAPLT00000019812

328761 - 458932

130172