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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4058546_4089974_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4058546 - 4089974
Intron Length:
31429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CTGCCCTCACCG
Flanking Amino Acid:
LLAILLAYFIAMHLLGLNWQ
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
66.9
0.38
1
62.4
39.7
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
47.3
-0.3
1.9
52.86
47.5

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027758
3864620 - 4212991
348372
ENSAPLT00000043924
3550485 - 4212991
662507
ENSAPLT00000027261
3541174 - 4212991
671818
ENSAPLT00000043087
3908343 - 4212991
304649
ENSAPLT00000023581
3590967 - 4212991
622025
ENSAPLT00000043044
3808693 - 4212991
404299
ENSAPLT00000003986
3864620 - 4212991
348372
ENSAPLT00000033019
3615953 - 4212991
597039
ENSAPLT00000044052
3550485 - 4212991
662507