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Intron Name: Anas_platyrhynchos_platyrhynchos_14_408646_409304_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

408646 - 409304

Intron Length:

659

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTGCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCCAT

U12 Branch Point Sequence:

TTGTCCTTCTCC

Flanking Amino Acid:

GWNSIGIIDLIQQRQFNKAS

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.8

84.9

26.3

Major BPS

0.37

1.3

76.1

Major PPT

65.5

0.35

0.9

56.3

33.5

Minor 5ss

32.1

-2

2.8

39.2

40.5

Minor BPS

-0.3

3.6

73.97

43.1

Associated Gene:

Gene:

HTR4

Ensembl Gene ID:

ENSAPLG00000009505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009905

371061 - 412746

41686

ENSAPLT00000042945

328761 - 416190

87430

ENSAPLT00000039908

328761 - 457643

128883

ENSAPLT00000021969

328761 - 413462

84702

ENSAPLT00000019812

328761 - 458932

130172