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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_409874_416183_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
409874 - 416183
Intron Length:
6310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TGTCTCTTATCC
Flanking Amino Acid:
TTINGSTHVLRH*
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.4
0.73
0.8
80.6
31
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
63.2
0.39
1.6
72.41
38.4

Associated Gene:

Gene:
HTR4
Ensembl Gene ID:
ENSAPLG00000009505
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042945
328761 - 416190
87430