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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_409874_457621_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
409874 - 457621
Intron Length:
47748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCCAT
U12 Branch Point Sequence:
CCTCTCCTACCC
Flanking Amino Acid:
TTINGSTHVLRVNSWRC*
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
64.5
0.36
1.2
72.7
34.4
Major PPT
82.1
0.72
0.7
76.7
25.5
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
45.8
-0.3
1.9
55.63
42.9

Associated Gene:

Gene:
HTR4
Ensembl Gene ID:
ENSAPLG00000009505
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039908
328761 - 457643
128883