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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_409874_458844_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
409874 - 458844
Intron Length:
48971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AAATCTTTATGT
Flanking Amino Acid:
TTINGSTHVLRYTVLHNGHH
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.3
0.71
0.8
73.5
35.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
51.6
0.13
1.9
68.27
42.5

Associated Gene:

Gene:
HTR4
Ensembl Gene ID:
ENSAPLG00000009505
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019812
328761 - 458932
130172