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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4112023_4129364_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4112023 - 4129364
Intron Length:
17342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
TTCAATTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TTCCGTTCAATT
Flanking Amino Acid:
PGFHGADCAKAACPVLCSGN
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
77
0.61
0.9
68.8
41.5
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
48.7
-0
1.9
69.06
42.6

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003986
3864620 - 4212991
348372
ENSAPLT00000034465
3615953 - 4212991
597039
ENSAPLT00000044052
3550485 - 4212991
662507
ENSAPLT00000027758
3864620 - 4212991
348372
ENSAPLT00000043924
3550485 - 4212991
662507
ENSAPLT00000027261
3541174 - 4212991
671818
ENSAPLT00000043087
3908343 - 4212991
304649
ENSAPLT00000023581
3590967 - 4212991
622025
ENSAPLT00000043044
3808693 - 4212991
404299