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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4183406_4190381_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4183406 - 4190381
Intron Length:
6976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCTAT
U12 Branch Point Sequence:
TTTTCCCTAAAG
Flanking Amino Acid:
SKNVTSILELSNNPAHKYYL
Intron Amino Acid Position:
1123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
56.1
0.15
1.5
58.5
47.9
Major PPT
78.9
0.65
0.9
79.7
26.4
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
68
0.43
1.9
77.92
38.4

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033019
3615953 - 4212991
597039
ENSAPLT00000023581
3590967 - 4212991
622025
ENSAPLT00000003986
3864620 - 4212991
348372
ENSAPLT00000043924
3550485 - 4212991
662507
ENSAPLT00000043087
3908343 - 4212991
304649