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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4186401_4190381_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4186401 - 4190381
Intron Length:
3981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCTAT
U12 Branch Point Sequence:
TTTTCCCTAAAG
Flanking Amino Acid:
LELRNKEFKHSNNPAHKYYL
Intron Amino Acid Position:
1301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
56.1
0.15
1.5
58.5
47.9
Major PPT
78.9
0.65
0.9
79.7
26.4
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
68
0.43
1.9
77.92
38.4

Associated Gene:

Gene:
TENM2
Ensembl Gene ID:
ENSAPLG00000003760
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027261
3541174 - 4212991
671818
ENSAPLT00000044052
3550485 - 4212991
662507
ENSAPLT00000043044
3808693 - 4212991
404299
ENSAPLT00000034465
3615953 - 4212991
597039
ENSAPLT00000027758
3864620 - 4212991
348372