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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4240810_4253429_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4240810 - 4253429
Intron Length:
12620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TTTTGCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTATTAATC
Flanking Amino Acid:
AILQEVPRNAGYTKPLTFAD
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
66.8
0.51
1.6
74.76
36.2

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018910
4240523 - 4294415
53893