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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4260946_4261859_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4260946 - 4261859
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CACCTTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TGCTCCAAAAAT
Flanking Amino Acid:
KAEIATTKSRVNKLKREVAH
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
75.5
0.57
0.8
68.4
31.6
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
49
0.01
2.1
71.07
45.2

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913
ENSAPLT00000022170
4247824 - 4294415
46592