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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4264808_4269976_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4264808 - 4269976
Intron Length:
5169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
CGTGAAATAACT
Flanking Amino Acid:
LRLRYEEAKRRIANLKIQLA
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
81.9
0.72
0.8
76.6
32
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
44.4
-0.3
2.1
64.09
45.4

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022170
4247824 - 4294415
46592
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913