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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4274494_4279527_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4274494 - 4279527
Intron Length:
5034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
CTTTTCTGATAG
Flanking Amino Acid:
PRAGDKHLGQGVNTAGGTAL
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
72
0.49
1
68.8
37.3
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
47.8
-0.3
1.9
56.96
44.4

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022170
4247824 - 4294415
46592
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913