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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4281466_4282951_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4281466 - 4282951
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATCTCTCTAATA
Flanking Amino Acid:
VGTAKVQIAMRYDDKNKQFA
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.6
0.69
0.9
78.7
33.5
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
61
0.34
1.6
70.03
36.7

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022170
4247824 - 4294415
46592
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913