About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4285080_4286585_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4285080 - 4286585
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
CCCCTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTACTAAAAT
Flanking Amino Acid:
VDKSHLEECLGGAQISLAEI
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
84.7
32.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.8
0.45
0.9
64.8
29.3
Minor 5ss
38.2
-1.3
2.8
50.3
39.9
Minor BPS
56.6
0.29
2
78.27
43.6

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913
ENSAPLT00000022170
4247824 - 4294415
46592
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967