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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4286739_4287325_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4286739 - 4287325
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
TTGTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTATCTTTAAAA
Flanking Amino Acid:
HSEILCTDKTDSVSALLEQT
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.4
36.4
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
82.7
0.74
0.8
81.4
30.6
Minor 5ss
36
-1.6
2.9
47.7
41.5
Minor BPS
71
0.65
1.3
74.57
36.3

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913
ENSAPLT00000022170
4247824 - 4294415
46592