Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4288371_4289873_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4288371 - 4289873

Intron Length:

1503

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATCA

5'SS Class:

strong_major

3'SS Sequence:

ATCTGTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

ACTGCAGTATCT

Flanking Amino Acid:

SQLHMEIAVKVDKETNTDSL

Intron Amino Acid Position:

887

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

73.8

30.8

Major BPS

72.8

0.57

30.3

Major PPT

80.8

0.69

0.9

77.4

36.3

Minor 5ss

37.6

-1.4

3.1

48.6

47.1

Minor BPS

42.2

-0.5

2.4

62.99

Associated Gene:

Gene:

WWC1

Ensembl Gene ID:

ENSAPLG00000003449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022170

4247824 - 4294415

46592

ENSAPLT00000018910

4240523 - 4294415

53893

ENSAPLT00000018323

4252691 - 4294657

41967

ENSAPLT00000003530

4235576 - 4294957

59382

ENSAPLT00000043798

4223503 - 4294415

70913