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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4290039_4290354_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4290039 - 4290354
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTCACAAAATA
Flanking Amino Acid:
PGPQSQYVCRLNRSDSDSST
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.9
0.76
0.8
80.9
29.8
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
47.4
-0.2
2
66.97
39.2

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022170
4247824 - 4294415
46592
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913