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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4293828_4294348_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4293828 - 4294348
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGCA
5'SS Class:
major
3'SS Sequence:
CATCTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTTGCACTAACT
Flanking Amino Acid:
RKEPLEVQSFREKMAFFTRP
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.3
34.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
77.6
0.62
0.8
69.6
36.4
Minor 5ss
36.9
-1.5
3.3
48.6
47
Minor BPS
54.6
0.22
2.1
79.08
42.4

Associated Gene:

Gene:
WWC1
Ensembl Gene ID:
ENSAPLG00000003449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022170
4247824 - 4294415
46592
ENSAPLT00000018910
4240523 - 4294415
53893
ENSAPLT00000018323
4252691 - 4294657
41967
ENSAPLT00000003530
4235576 - 4294957
59382
ENSAPLT00000043798
4223503 - 4294415
70913