Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4302994_4303745_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4302994 - 4303745

Intron Length:

752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

GTTGCTTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTGAC

U12 Branch Point Sequence:

CGTGATGTGACA

Flanking Amino Acid:

KDIVKEFEDKGFVQVDDGRK

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.6

37.3

Major BPS

62.5

0.31

1.2

54.8

42.1

Major PPT

73.4

0.53

0.9

65.6

Minor 5ss

31.2

-2.1

3.5

46.7

48.6

Minor BPS

41.7

-0.6

2.2

51.17

40.9

Associated Gene:

Gene:

RARS1

Ensembl Gene ID:

ENSAPLG00000002426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019512

4294349 - 4307678

13330

ENSAPLT00000002505

4294349 - 4307959

13611