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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4307441_4310405_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4307441 - 4310405
Intron Length:
2965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGCCGTGG
5'SS Class:
weak_major
3'SS Sequence:
GCAGTTGTCGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAACG
Flanking Amino Acid:
LSTTAAPSAVNSVKVVASSY
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.3
0.06
1.2
41.2
42
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
59.9
0.22
1
53.6
41.3
Minor 5ss
35.3
-1.7
3.4
43.7
45.9
Minor BPS
60.7
0.2
1.7
62.74
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001119
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044380
4306979 - 4321911
14933