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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4313661_4314181_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4313661 - 4314181
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTGTCTTTAATA
Flanking Amino Acid:
DYLRNHFLDQVGLFRKSGVK
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
0.8
74.7
35.1
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
75.4
0.79
1.1
75.69
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001119
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044380
4306979 - 4321911
14933
ENSAPLT00000033211
4306979 - 4321694
14716
ENSAPLT00000001157
4306979 - 4321911
14933
ENSAPLT00000046063
4306979 - 4356583
49605