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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4317686_4318206_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4317686 - 4318206
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGTTCTTACAC
Flanking Amino Acid:
LDADAIESLFRRLNTLNKCA
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
68.1
0.41
0.8
59.7
36.4
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
60.1
0.3
1.7
70.86
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001119
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044380
4306979 - 4321911
14933
ENSAPLT00000033211
4306979 - 4321694
14716
ENSAPLT00000001157
4306979 - 4321911
14933
ENSAPLT00000046063
4306979 - 4356583
49605