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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4377081_4378495_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4377081 - 4378495
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCTTTTGAACA
Flanking Amino Acid:
QLKALFLEHEGYFGAVGALL
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.5
0.64
1
76.6
36.3
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
67.6
0.55
1.4
75.34
36.3

Associated Gene:

Gene:
PANK3
Ensembl Gene ID:
ENSAPLG00000000592
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000722
4375424 - 4389836
14413