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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4385026_4386846_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4385026 - 4386846
Intron Length:
1821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTAACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
AYKFEEDFRTIGDLQLHKLD
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.1
61.2
43.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.5
0.71
0.9
77.7
34.4
Minor 5ss
36.9
-1.5
3.1
50.4
40.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
PANK3
Ensembl Gene ID:
ENSAPLG00000000592
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000722
4375424 - 4389836
14413