Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4428701_4429736_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4428701 - 4429736

Intron Length:

1036

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TAATGTTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

GCAACCTTACCT

Flanking Amino Acid:

IRPQANISLQVATDKDNGIL

Intron Amino Acid Position:

935

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

79.7

35.4

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

74.8

0.56

68.6

41.6

Minor 5ss

-0.9

2.9

58.1

46.5

Minor BPS

58.5

0.35

1.7

70.47

45.8

Associated Gene:

Gene:

SLIT3

Ensembl Gene ID:

ENSAPLG00000014516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027194

4404413 - 4651834

247422

ENSAPLT00000015357

4404413 - 4651210

246798