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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4463014_4479392_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4463014 - 4479392
Intron Length:
16379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCCTA
5'SS Class:
major
3'SS Sequence:
TTTTCCCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAATT
Flanking Amino Acid:
YQCTCPFGFKGRDCSVPINS
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
43.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.8
0.47
0.9
67.7
32.7
Minor 5ss
40.4
-1.1
3.3
56.2
48
Minor BPS
71.5
0.75
1.4
84.15
37

Associated Gene:

Gene:
SLIT3
Ensembl Gene ID:
ENSAPLG00000014516
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015357
4404413 - 4651210
246798
ENSAPLT00000027194
4404413 - 4651834
247422