About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4479518_4483971_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4479518 - 4483971
Intron Length:
4454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTCATTAATA
Flanking Amino Acid:
TTPTHHFQCKEPVDINVVSK
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.7
0.8
0.8
77.2
37
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
75.6
0.8
1.5
83.27
30.4

Associated Gene:

Gene:
SLIT3
Ensembl Gene ID:
ENSAPLG00000014516
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027194
4404413 - 4651834
247422
ENSAPLT00000015357
4404413 - 4651210
246798