Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4507155_4515605_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4507155 - 4515605

Intron Length:

8451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

TGTTCCATTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

ATGTTCTTATTT

Flanking Amino Acid:

MFRGLTGLKTFNLLANSFNC

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.1

69.8

34.3

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

81.7

0.71

0.8

78.4

34.7

Minor 5ss

35.5

-1.6

3.2

47.5

42.3

Minor BPS

64.5

0.53

1.6

77.51

39.6

Associated Gene:

Gene:

SLIT3

Ensembl Gene ID:

ENSAPLG00000014516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015357

4404413 - 4651210

246798