Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4524095_4525259_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4524095 - 4525259

Intron Length:

1165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

TTGTTCCTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

GAAGCATTAAAT

Flanking Amino Acid:

PSHLPEYTTDLRLNDNDISV

Intron Amino Acid Position:

334

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.1

67.9

38.9

Major BPS

73.5

0.58

79.3

29.4

Major PPT

0.74

0.8

81.3

30.7

Minor 5ss

36.9

-1.5

3.3

42.2

Minor BPS

0.08

1.8

43.4

Associated Gene:

Gene:

SLIT3

Ensembl Gene ID:

ENSAPLG00000014516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027194

4404413 - 4651834

247422

ENSAPLT00000015357

4404413 - 4651210

246798