Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4539520_4542075_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4539520 - 4542075

Intron Length:

2556

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGTATG

5'SS Class:

major

3'SS Sequence:

ATCCTTCTCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTCTGATTAAAC

Flanking Amino Acid:

LFAPLRSIQTLHLAQNPFVC

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.1

71.2

40.3

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

79.2

0.66

0.8

76.9

Minor 5ss

36.8

-1.5

2.9

52.3

44.3

Minor BPS

51.5

0.03

2.1

68.75

42.5

Associated Gene:

Gene:

SLIT3

Ensembl Gene ID:

ENSAPLG00000014516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015357

4404413 - 4651210

246798

ENSAPLT00000027194

4404413 - 4651834

247422