About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4606272_4626078_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4606272 - 4626078
Intron Length:
19807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
64.4
38.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
37
-1.5
2.9
50
46.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
SLIT3
Ensembl Gene ID:
ENSAPLG00000014516
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015357
4404413 - 4651210
246798
ENSAPLT00000027194
4404413 - 4651834
247422