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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_476060_477124_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
476060 - 477124
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TGCTTATTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTCTTTTAATT
Flanking Amino Acid:
KDCPKMMFIHATRCRVLKHL
Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.4
0.64
0.8
73
36.5
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
72.8
0.79
1.1
83.14
31.5

Associated Gene:

Gene:
FBXO38
Ensembl Gene ID:
ENSAPLG00000009306
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009723
473095 - 492271
19177