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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_478046_480439_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
478046 - 480439
Intron Length:
2394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
GCAAACAGAAAA
Flanking Amino Acid:
LSHVPLVSESEVAKPKPRQT
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
83.6
0.76
0.9
80.5
37
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
38.8
-0.8
1.8
42.85
37

Associated Gene:

Gene:
FBXO38
Ensembl Gene ID:
ENSAPLG00000009306
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009723
473095 - 492271
19177