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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_483955_484663_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
483955 - 484663
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
TCAATCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGACCTTATGT
Flanking Amino Acid:
QAEEQQIAAEALNEMEEVAP
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.7
43
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80
0.68
0.9
77
36.8
Minor 5ss
42.8
-0.8
2.8
47.7
47.7
Minor BPS
56.8
0.29
2
76.5
45.9

Associated Gene:

Gene:
FBXO38
Ensembl Gene ID:
ENSAPLG00000009306
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009723
473095 - 492271
19177