About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_486970_487316_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
486970 - 487316
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGACAT
5'SS Class:
weak_major
3'SS Sequence:
GTTTTTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTACTGTATT
Flanking Amino Acid:
LGYVDEFLLQCKMTNGDLVK
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.1
57.2
41.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.8
0.69
0.7
76.8
32
Minor 5ss
41.7
-0.9
3.2
57.3
46.8
Minor BPS
50.2
0.09
2
74.86
41.4

Associated Gene:

Gene:
FBXO38
Ensembl Gene ID:
ENSAPLG00000009306
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009723
473095 - 492271
19177